@burfadel
I would guess staxrip.exe consumed too much memory, it can be caused by either staxrip itself or by avisynth/vapoursynth/plugin.
Take a look in task manager regarding memory, especially while and after using crop and preview dialogs.
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My File Batch is defaulting to avisynth, is there a way to have it use vapoursynth? Thank you
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Yes there is, before you open the files right-click the filters list and choose 'Filter Setup' > VapourSynth from the menu.
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So the only question remaining is why the deinterlace setting disappeared from the Encoder Options GUI? This GUI is probably part of Stax?
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I don't remember it, for missing switches you can make a request here or better at the github issue tracker.