So it turns out that I had made a mistake, and when I was looking through the list of errors I had been checking the frame numbers against the QTGMC'd track, instead of the source. Without having checked extensively, it looks like the first and second types of artifacting were caused by QTGMC and don't exist in the source. I will be rechecking errors using the proper source, and I'll post again either if I run into a problem, or when I have finished checking for errors. This might take a while.
Also, all of the issues that exist in the PAL version also exist in the NTSC version, however the NTSC version has further issues. Using the NTSC version for compositing repairs isn't an option.
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