Mono files are not supported by eac3to, simply because I don't have such a file for testing. If you can send me the first 5MB of an eac3 mono file, I can probably add support for that, I guess.
About m2ts: Probably Nero supports that, too. But again I need a sample file. If you can get me a m2ts file with only TrueHD in it and no video (e.g. by using the Transport Stream Remuxer), 5MB should be enough.
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