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Nonsense. Updating packages or not does not slow down the encoding. It is not your bandwidth to be saved, but the amount of data downloaded from MeGUI's update servers during an update. Not during your encode. You can manually enable all packages which have been disabled while not using them for a while (only NeroAacEnc and Haali Media Splitter are obsolete and can be kept disabled).
There is surely a different reason for your encodes to be slower than expected. Most probably a lack of knowledge, rather in front of your monitor than inside MeGUI.
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