If you don't like track names at all, you could set up a script to run after each job has completed (see preferences) that uses mkvmerge & mkvpropedit in order to remove any existing track names in the output file just created. MKVToolNix does provide all the mechanisms for automating nearly anything you would want to do, but you'll have to invest a bit of your time to tailor it to your specific needs.
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Latest MKVToolNix is v83.0
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