Hi Mister XY,
you are right, AVStoDVD seems to be unable to recognize chapters from this file. First I thought that the reason could be that you are cheating a little bit (you muxed a 12sec video track with a 1hour 39min audio track). But when I tested a file with matching track lengths I got the same behavior. Converting the file to AVC video solved the issue.
Until MrC fixes the problem you need to use some workaround. The easiest workaround I found is using "ChapterEditor" by hubblec4. Click the "Convert" tab, load the source MKV and save the chapters to a file using the "Celltimes" format. Select the fps value of the target, not the source. Then import this Celltimes chapter file directly into AVStoDVD.
Cheers
manolito
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