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Old 5th August 2014, 13:24   #4  |  Link
sneaker_ger
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Join Date: Dec 2002
Posts: 5,565
Mkvmerge is designed in a way that no desyncing should happen even if there are overlapping frames. There's likely something wrong with your cutting process you've applied before merging. If in doubt mux video+audio together as a first step and see if every part is in-sync. Only after that append those parts.
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